PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.supercontig_7.92
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Caricaceae; Carica
Family WRKY
Protein Properties Length: 262aa    MW: 29182.3 Da    PI: 4.6165
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.supercontig_7.92genomeASGPBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.12.4e-3076134259
                                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++ itY+ eHnh+
  evm.model.supercontig_7.92  76 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTMLLITYSCEHNHP 134
                                 69*************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-3169136IPR003657WRKY domain
PROSITE profilePS5081132.09970136IPR003657WRKY domain
SuperFamilySSF1182906.02E-2671136IPR003657WRKY domain
SMARTSM007743.7E-3575135IPR003657WRKY domain
PfamPF031061.5E-2577134IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MPSSFNTNPF MTEQEDNENR PENGPESPPS NTYGDGKITS VLSPKRSRKS IQKRVVSVPI  60
KEVEGSRLKG ETAPPSDSWA WRKYGQKPIK GSPYPRGYYR CSSSKGCPAR KQVERSRVDP  120
TMLLITYSCE HNHPWPASRN STSKQPVKPE TAPVPDPEPD PDPADSERSE PEEKFTNLGE  180
DSLMAATTPG DEFTWFSEME TTSSTVLESP IFAERTSGDA DVAMFIPMRE EDESLFADLD  240
ELPECSMVFR HRNVGSQVEI C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-18761361574WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00167DAPTransfer from AT1G29280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012445052.11e-115PREDICTED: probable WRKY transcription factor 65 isoform X1
SwissprotQ9LP561e-97WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A059Q9141e-115A0A059Q914_G
TrEMBLA0A0D2TQX91e-115A0A0D2TQX9_G
STRINGPOPTR_0011s06990.11e-111(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53832849
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.15e-98WRKY DNA-binding protein 65